I want to create a loop to repeat code lines in a list of datasets. Each dataset looks like:
gwas_1
ID p
1 0.0000005
2 0.0123474
...
gwas_2
ID p
1 0.0000055
2 0.5854587
...
So I would like to create a new column and check frequencies in a new column in each dataset.I did it before like this
data=gwas_1
data$p_threshold <- ifelse(data$p<0.001, 1, 0)
table (data$p_threshold)
data=gwas_2
data$p_threshold <- ifelse(data$p<0.001, 1, 0)
table (data$p_threshold)
but realised that it might not very efficient. Could you please help me to create a loop as my loop doesn't work ("Error: $ operator is invalid for atomic vectors"):
list=c("gwas_1, gwas_2, gwas_3")
for (db in list){
db$p_threshold <- ifelse(db$p<0.001, 1, 0)
table (db$p_threshold)
}
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