#!/bin/bash
for file1 in
/net/zmf8/cb/37/lxy161830/work/target_readcount/*.readcount.txt;
do
for file2 in /net/zmf8/cb/37/lxy161830/work/nontarget_readcount/*.nontargetreawdcount.txt;
if [ $( basename${file1:0:1} ) == $( basename${file2:0:1} ) ];then
cat $file1 $file2 > '*.readcount.txt'
fi
done
Here is my code but i just don't know how to compare two file names only the '*' part. And it always replied
./integrate.sh: line 5: syntax error near unexpected token `if'
./integrate.sh: line 5: ` if [ $( basename${file1:0:1} ) == $(basename${file2:0:1} ) ];then'
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